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Oddly enough, I was just flipping through this month's LJ issue before reading your review, and this exact problem was mentioned in *da dum* an article about SuperKaramba! :=)
Anyway, you need to find the following line in the karamba.cpp (in the src directory after you extract the source):
And comment it out, like so:
// KWin::setType(winId(), NET::Dock);
Assuming this fixes your problem, forward any thanks to Marcel Gagne.